.. DO NOT EDIT THIS FILE DIRECTLY This file is automatically generated by docs/_citations/format_citations.py .. _citedby: Cited by ======== .. image:: https://img.shields.io/badge/Total%20citations-2031-blue :alt: Total Citations .. image:: https://img.shields.io/badge/Unique%20citations-1080-blue :alt: Unique Citations This page lists scientific publications that have cited `core publications`_ of the Immcantation framework in their research. Citations are collected from PubMed and updated regularly. Citing papers are counted only once, even if they cite multiple Immcantation core publications. **Total citations:** 2031 | **Unique citations:** 1080 | **Last updated:** June 05, 2026 - Zeglinski Kathleen et al. **Alpseq: an open-source workflow to turbocharge nanobody discovery with high-throughput sequencing.**. *mAbs*. 2026. `PMID:41631412 `_ - Jena Kautilya K et al. **A glycan-based adjuvant expands the breadth and duration of protection of mRNA-based vaccines.**. *Nature immunology*. 2026. `PMID:42174265 `_ - Pinto Juliana Edelvacy Lima et al. **Identification of gene conversion events in horse IGHV suggests preferential hotspots for diversification.**. *Immunogenetics*. 2026. `PMID:42151624 `_ - Dehghannasiri Roozbeh et al. **Reference-free discovery with barcoded single-cell sequencing.**. *Nature biotechnology*. 2026. `PMID:42020848 `_ - Demela Pietro et al. **Competing gene regulatory networks drive naive and memory B cell differentiation.**. *Molecular systems biology*. 2026. `PMID:41991769 `_ - Vasilenko Nicole et al. **Extensive peripheral immunoglobulin repertoire analyses in people with multiple sclerosis reveal disease-specific signatures and distinct treatment effects of disease modifying drugs.**. *Journal of neuroinflammation*. 2026. `PMID:41981407 `_ - Zost Seth J et al. **Epitope-focused discovery of SARS-CoV-2 antibodies that potently neutralize Omicron variants.**. *Nature microbiology*. 2026. `PMID:41820555 `_ - Officer Aengus et al. **Immunoglobulin gene polymorphisms shape the naïve B-cell receptor repertoire; relevance to celiac disease.**. *Genes and immunity*. 2026. `PMID:41748905 `_ - Zhang Wuji et al. **IFN-gene signatures in B cells following influenza A and B virus infection and influenza vaccination.**. *EMBO molecular medicine*. 2026. `PMID:41803327 `_ - Benavides Sara et al. **Increased VH4+JH6+ antibody heavy chain use in plasmablasts from asymptomatic multiple sclerosis patients.**. *Genes and immunity*. 2026. `PMID:41857375 `_ - Hayashi Fumie et al. **Antigen specificity of clonally enriched CD8+ T cells in multiple sclerosis.**. *Nature immunology*. 2026. `PMID:41644766 `_ - Yu Xinjie et al. **Decoding adaptive immunity: advanced strategies in T and B cell repertoire analysis.**. *Journal of translational medicine*. 2026. `PMID:41689101 `_ - Jiang Shaowen et al. **A temporal and spatial atlas of adaptive immune responses in the lymph node following viral infection.**. *Proceedings of the National Academy of Sciences of the United States of America*. 2026. `PMID:41587309 `_ - Vatovec Taja et al. **Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function.**. *Nature immunology*. 2026. `PMID:41540267 `_ - Huang Shulun et al. **Porcine B cell receptor repertoire uncovers balanced recognition of antigenic structures on serotype Asia1 foot-and-mouth disease virus.**. *PLoS pathogens*. 2026. `PMID:41650013 `_ - Wu Qingqin et al. **Refined phenotyping of vaccine responses reveals transcriptomic determinants of neutralizing antibody heterogeneity.**. *NPJ vaccines*. 2026. `PMID:41617721 `_ - Thörnqvist Linnea et al. **Allergen-specific human IgE isolated through an allergen-agnostic pipeline-understanding immune response and allergen recognition.**. *Communications biology*. 2026. `PMID:41606257 `_ - Mathews Joseph et al. **Computing the inducibility of broadly neutralizing antibodies under a context-dependent model of affinity maturation: applications to sequential vaccine design.**. *Journal of immunology (Baltimore, Md. : 1950)*. 2026. `PMID:40971634 `_ - Zhou Pingjing et al. **Targeting senescent EGR1+ B cells enhances immunotherapy efficacy in esophageal squamous cell carcinoma.**. *Cell reports. Medicine*. 2026. `PMID:41483805 `_ - Song Shengli et al. **Profiling Allogeneic HLA-specific B-cell Responses Utilizing a 64-plex Single-HLA Reporter Cell Panel.**. *bioRxiv : the preprint server for biology*. 2026. `PMID:41659507 `_ - Al-Khatib Hebah A et al. **Dynamics of B-cell response in MERS-CoV patients and survivors with hybrid immunity.**. *mBio*. 2026. `PMID:41400350 `_ - Song Shengli et al. **Functional Convergence of Genetically Diverse B-Cell Receptors in Simian-HIV Infected Rhesus Macaques.**. *bioRxiv : the preprint server for biology*. 2026. `PMID:41648506 `_ - Wiatr Marie et al. **Memory B cell development in response to mRNA SARS-CoV-2 and nanoparticle immunization in mice.**. *Proceedings of the National Academy of Sciences of the United States of America*. 2026. `PMID:41481458 `_ - Lees William D et al. **The current landscape of adaptive immune receptor genomic and repertoire data: OGRDB and VDJbase.**. *Nucleic acids research*. 2026. `PMID:41206474 `_ - Muir Luke et al. **Multifaceted B cell response to transient HIV viremia in elite controllers.**. *PLoS pathogens*. 2026. `PMID:41544177 `_ - Naouar Ikbel et al. **Lymphotoxin-dependent elevated meningeal CXCL13:BAFF ratios drive gray matter injury.**. *Nature immunology*. 2026. `PMID:41482555 `_ - Giff Alexis Elena et al. **Deep cervical lymph node analysis in central nervous system inflammatory disease.**. *Frontiers in immunology*. 2026. `PMID:41668753 `_ - Gridley John et al. **iHALT unlocks liver functionality as a surrogate secondary lymphoid organ.**. *Nature*. 2026. `PMID:41299178 `_ - Wetzel Nora Sandrine et al. **Patient-Derived Monoclonal Myelin Oligodendrocyte Glycoprotein Autoantibodies Mediate Cytotoxicity.**. *Neurology(R) neuroimmunology & neuroinflammation*. 2026. `PMID:41406408 `_ - Guo Dongjun et al. **ImmunoMatch learns and predicts cognate pairing of heavy and light immunoglobulin chains.**. *Nature methods*. 2026. `PMID:41254366 `_ - Miglierina Emma et al. **DIS3 licenses B cells for plasma cell differentiation in humans.**. *Cellular & molecular immunology*. 2026. `PMID:41286079 `_ - Li Qi et al. **B cell targeted CAR-T therapy for autoimmune diseases.**. *Frontiers of medicine*. 2025. `PMID:41452401 `_ - Zhang Lei et al. **Distinct immune cell dynamics associated with immune-related adverse events during combined chemoradiation and immune checkpoint inhibitor therapy.**. *Nature communications*. 2025. `PMID:41430079 `_ - Reers Ashley B et al. **Immunoglobulin germline reference sequences enable investigations and reveal insights into bat-specific immunity.**. *iScience*. 2025. `PMID:41321632 `_ - Yasumizu Yoshiaki et al. **Host Genetic Architecture between Epstein-Barr Virus Activity and Multiple Sclerosis Reveals Shared Pathways.**. *medRxiv : the preprint server for health sciences*. 2025. `PMID:41445616 `_ - Siniscalco Emily R et al. **Sequential class switching generates antigen-specific gut IgA from IgG1 B cells.**. *Immunity*. 2025. `PMID:41253159 `_ - Marina-Zárate Ester et al. **Highly functional and prolonged germinal center T follicular helper cell responses are associated with enhanced neutralizing antibody development.**. *Immunity*. 2025. `PMID:41205611 `_ - Kim Jeong Yeon et al. **B cell-reactive neoantigens boost antitumor immunity.**. *Science advances*. 2025. `PMID:41337574 `_ - Li Haibo et al. **Reading of human acute immune dynamics in omicron SARS-CoV-2 breakthrough infection.**. *Emerging microbes & infections*. 2025. `PMID:40231451 `_ - Johnson Mackenzie M et al. **Nucleotide context models outperform protein language models for predicting antibody affinity maturation.**. *PLoS computational biology*. 2025. `PMID:41325480 `_ - Engelbrecht Eric et al. **Germline polymorphisms in the immunoglobulin kappa and lambda loci underpinning antibody light chain repertoire variability.**. *Nature communications*. 2025. `PMID:41315391 `_ - Chen Xiaomei et al. **Challenges and strategies in clinical applications of CAR-T therapy for autoimmune diseases.**. *Journal of hematology & oncology*. 2025. `PMID:41316450 `_ - Lin Xinqing et al. **Uncovering the immune mechanisms underlying the emergence of immunotherapy-induced pneumonitis in lung cancer patients.**. *Nature communications*. 2025. `PMID:41298513 `_ - Sigorskikh A I et al. **Fastq-dupaway: a fast and memory-efficient tool for deduplication of single- and paired-end NGS data.**. *Scientific reports*. 2025. `PMID:41290940 `_ - Johnson Mackenzie M et al. **Nucleotide context models outperform protein language models for predicting antibody affinity maturation.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40666976 `_ - Çakan Elif et al. **CTLA-4 blockade shifts the B cell repertoire toward autoimmunity.**. *The Journal of clinical investigation*. 2025. `PMID:41026527 `_ - Younis Shady et al. **Epstein-Barr virus reprograms autoreactive B cells as antigen-presenting cells in systemic lupus erythematosus.**. *Science translational medicine*. 2025. `PMID:41223250 `_ - Wei Yulong et al. **Transcription factor BACH2 shapes tissue-resident memory T cell programs to promote HIV-1 persistence.**. *Immunity*. 2025. `PMID:40845842 `_ - Dang Van Duc et al. **Distinct autoreactive CD19- plasma cell subsets accumulate in lupus-prone mice.**. *Nature communications*. 2025. `PMID:41213970 `_ - McEnany John et al. **Dynamics of local B cell migration during affinity maturation in the human tonsil.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:41279088 `_ - Chernyshev Mark et al. **Detection of PCR chimeras in adaptive immune receptor repertoire sequences.**. *Bioinformatics (Oxford, England)*. 2025. `PMID:41124049 `_ - Kwon Taeyong et al. **Pigs lacking Natural Killer T cells have altered cellular responses to influenza.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:41279250 `_ - Fielding Jessie J et al. **TyCHE enables time-resolved lineage tracing of heterogeneously-evolving populations.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:41279821 `_ - Matsen Frederick A et al. **Separating selection from mutation in antibody language models.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:41279420 `_ - Grabauskas Titas et al. **CMV-specific clonal expansion of Th1, GZMK+ CD8+, and TEMRA T cells revealed by human PBMC single cell profiling.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40666903 `_ - Sutton Henry J et al. **Simultaneous induction of multiple classes of broadly neutralizing antibody precursors by combination germline-targeting immunization in nonhuman primates.**. *Science immunology*. 2025. `PMID:41105754 `_ - Sarkkinen Joona et al. **Intranodal expansion of follicular T helper cells in patients with multiple sclerosis.**. *JCI insight*. 2025. `PMID:41059568 `_ - van Ginneken Daphne et al. **Delineating inter- and intra-antibody repertoire evolution with AntibodyForests.**. *Bioinformatics (Oxford, England)*. 2025. `PMID:41065461 `_ - Cheung Michelle W et al. **Reduced vaccine-induced germinal center outputs in patients with inflammatory bowel disease treated with anti-TNF biologics.**. *The Journal of clinical investigation*. 2025. `PMID:40728886 `_ - Inamo Jun et al. **Comparative single-cell and spatial profiling of anti-SSA-positive and anti-centromere-positive Sjögren's disease reveals common and distinct immune activation and fibroblast-mediated inflammation.**. *Nature communications*. 2025. `PMID:40983612 `_ - Knox James J et al. **B-Cell Subset Representation Predicts SARS-CoV-2 Vaccine Response in Solid Organ Transplant Recipients.**. *The Journal of infectious diseases*. 2025. `PMID:40459569 `_ - Manthiram Kalpana et al. **SARS-CoV-2 infection and vaccination elicit distinct pharyngeal mucosal B cell responses in children.**. *Research square*. 2025. `PMID:40964019 `_ - Montiel-Armendariz Andrea et al. **B cell αv integrin regulates tissue specialization and clonal expansion of lung germinal center and memory B cells after viral infection.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:39386536 `_ - Jung Jaeyong et al. **Commensal Bacteria Drive B-cell Lymphomagenesis in the Setting of Innate Immunodeficiency.**. *Blood cancer discovery*. 2025. `PMID:40608826 `_ - Ford Michael K B et al. **Genotyping of selected germline adaptive immune system loci using short-read sequencing data.**. *Genome research*. 2025. `PMID:40764056 `_ - Golabi Sahar et al. **Omega-3 Fatty Acids Supplementation and Neuroprotection, Inflammation, Fatigue, and Physical Activity in Multiple Sclerosis: A Randomized Controlled Trial.**. *Food science & nutrition*. 2025. `PMID:40905016 `_ - Wells Steven B et al. **Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age.**. *Nature immunology*. 2025. `PMID:40804529 `_ - MohammadiPeyhani Homa et al. **deepNGS navigator: exploring antibody NGS datasets using deep contrastive learning.**. *Bioinformatics (Oxford, England)*. 2025. `PMID:40796135 `_ - Richardson Eve et al. **Is the vaccination-induced B cell receptor repertoire predictable?**. *Immunoinformatics (Amsterdam, Netherlands)*. 2025. `PMID:41311460 `_ - Iyer Lakshmi Rani et al. **Current insight into HIV-1 persistence from single-cell transcriptome profiling in acutely treated cohorts of infection.**. *Current opinion in HIV and AIDS*. 2025. `PMID:40638066 `_ - Ping Pengyao et al. **How error correction affects polymerase chain reaction deduplication: A survey based on unique molecular identifier datasets of short reads.**. *Quantitative biology (Beijing, China)*. 2025. `PMID:41675965 `_ - Sung Kevin et al. **Thrifty wide-context models of B cell receptor somatic hypermutation.**. *eLife*. 2025. `PMID:40879331 `_ - Rao Vishal N et al. **Clonotype-enriched somatic hypermutations drive affinity maturation of a public human antibody targeting an occluded sarbecovirus epitope.**. *Cell reports*. 2025. `PMID:40803328 `_ - Schneider-Hohendorf Tilman et al. **B- and T cell receptor sequencing elucidates characteristics of lymphocyte depletion by ocrelizumab.**. *iScience*. 2025. `PMID:40727939 `_ - Ralph Duncan K et al. **Inference of germinal center evolutionary dynamics via simulation-based deep learning.**. *ArXiv*. 2025. `PMID:40832049 `_ - Brodsky Nina N et al. **Early-life human CD8+ T cells exhibit rapid, short-lived effector responses and a unique transcription factor landscape.**. *Proceedings of the National Academy of Sciences of the United States of America*. 2025. `PMID:40720649 `_ - Lv Kexin et al. **Broad neuraminidase antibodies confer protection against seasonal and avian influenza viruses.**. *Nature communications*. 2025. `PMID:40753167 `_ - Vit Filippo et al. **Measurement of Immunoglobulin Intraclonal diversification refines the clinical impact of IGHV mutational status in chronic lymphocytic leukemia.**. *Leukemia*. 2025. `PMID:40533497 `_ - Edahiro Ryuya et al. **Deciphering state-dependent immune features from multi-layer omics data at single-cell resolution.**. *Nature genetics*. 2025. `PMID:40721531 `_ - Bagnara Davide et al. **Chronic lymphocytic leukemia often arises by a multiclonal selection process.**. *Haematologica*. 2025. `PMID:39973373 `_ - Caniels Tom G et al. **Precise targeting of HIV broadly neutralizing antibody precursors in humans.**. *Science (New York, N.Y.)*. 2025. `PMID:40373114 `_ - Matsen Frederick A et al. **A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-Encoder.**. *Molecular biology and evolution*. 2025. `PMID:40794593 `_ - Parks K Rachael et al. **Vaccination with mRNA-encoded membrane-anchored HIV envelope trimers elicited tier 2 neutralizing antibodies in a phase 1 clinical trial.**. *Science translational medicine*. 2025. `PMID:40737434 `_ - Ramezani-Rad Parham et al. **Vaccination with an mRNA-encoded membrane-bound HIV envelope trimer induces neutralizing antibodies in animal models.**. *Science translational medicine*. 2025. `PMID:40737430 `_ - Conter Laura et al. **BLIMP1 controls GC B cell expansion and exit through regulating cell cycle progression and key transcription factors BCL6 and IRF4.**. *Cell reports*. 2025. `PMID:40650910 `_ - Bukhari Ameera M et al. **IgM+IgD- B cells in human gut-associated lymphoid tissue have memory features and give rise to IgM+ and IgA+ antibody-secreting cells.**. *Scientific reports*. 2025. `PMID:40695977 `_ - Engelbrecht Eric et al. **Germline polymorphisms in the immunoglobulin kappa and lambda loci explain variation in the expressed light chain antibody repertoire.**. *Research square*. 2025. `PMID:40709274 `_ - Kos Justin T et al. **Characterization of extensive diversity in immunoglobulin light chain variable germline genes across biomedically important mouse strains.**. *ImmunoHorizons*. 2025. `PMID:40682361 `_ - Engelbrecht Eric et al. **Germline polymorphisms in the immunoglobulin kappa and lambda loci explain variation in the expressed light chain antibody repertoire.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40501977 `_ - Konstantinovsky Thomas et al. **Enhancing sequence alignment of adaptive immune receptors through multi-task deep learning.**. *Nucleic acids research*. 2025. `PMID:40650972 `_ - Risley Christopher A et al. **Transcription factor T-bet regulates the maintenance and differentiation potential of lymph node and lung effector memory B cell subsets.**. *Immunity*. 2025. `PMID:40543512 `_ - van Ginneken Daphne et al. **Protein language model pseudolikelihoods capture features of in vivo B cell selection and evolution.**. *Briefings in bioinformatics*. 2025. `PMID:40825239 `_ - Martins Christina A et al. **Profile of the B cell receptor repertoire and antibody responses upon 17DD-YF vaccine boosting.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40631227 `_ - Varano Gabriele et al. **B-cell Receptor Silencing Reveals the Origin and Dependencies of High-Grade B-cell Lymphomas with MYC and BCL2 Rearrangements.**. *Blood cancer discovery*. 2025. `PMID:40402557 `_ - Ventura Lucas Haniel A et al. **Immunosenescence Profile Is Associated With Increased Susceptibility to Severe COVID-19.**. *Aging cell*. 2025. `PMID:40388115 `_ - Luo Jiaqi et al. **AffMB: affinity maturation analysis with SHM-guided B-cell lineage trees.**. *Bioinformatics (Oxford, England)*. 2025. `PMID:40674579 `_ - Da Vià Matteo Claudio et al. **Aberrant single-cell phenotype and clinical implications of genotypically defined polyclonal plasma cells in myeloma.**. *Blood*. 2025. `PMID:40009503 `_ - Rodrigues Kristen A et al. **Vaccines combining slow release and follicle targeting of antigens increase germinal center B cell diversity and clonal expansion.**. *Science translational medicine*. 2025. `PMID:40531969 `_ - Aron Edel et al. **Single cell immunophenotyping identifies CD8+ GZMK+ IFNG+ T cells as a key immune population in cutaneous Lyme disease.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40661371 `_ - Zuo Teng et al. **Somatic hypermutation generates antibody specificities beyond the primary repertoire.**. *Immunity*. 2025. `PMID:40339575 `_ - DeWitt William S et al. **Replaying germinal center evolution on a quantified affinity landscape.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40661619 `_ - Madsen Anders et al. **Identification of a seasonal influenza vaccine-induced broadly protective neuraminidase antibody.**. *The Journal of experimental medicine*. 2025. `PMID:40178595 `_ - Morgan Gareth J et al. **An updated AL-base reveals ranked enrichment of immunoglobulin light chain variable genes in AL amyloidosis.**. *Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis*. 2025. `PMID:39641756 `_ - Rodriguez Oscar L et al. **Human genetic variation shapes the antibody repertoire across B cell development.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40475565 `_ - Mizumaki Hiroki et al. **In depth transcriptomic profiling defines a landscape of dysfunctional immune responses in patients with VEXAS syndrome.**. *Nature communications*. 2025. `PMID:40394087 `_ - Sung Kevin et al. **Thrifty wide-context models of B cell receptor somatic hypermutation.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:39651125 `_ - Dizon Brian L P et al. **Human naïve B cells show evidence of anergy and clonal redemption following vaccination.**. *NPJ vaccines*. 2025. `PMID:40368926 `_ - Yang Evan et al. **In situ profiling of plasma cell clonality with image-based single-cell transcriptomics.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40463110 `_ - Rahimi Rod A et al. **Distinct phenotypes and repertoires of bronchoalveolar and airway mucosal T cells in health and allergic asthma.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40462898 `_ - Li Hao et al. **Mature tertiary lymphoid structures evoke intra-tumoral T and B cell responses via progenitor exhausted CD4+ T cells in head and neck cancer.**. *Nature communications*. 2025. `PMID:40335494 `_ - Mantus Grace E et al. **Distinct binding modes drive the broad neutralization profile of two persistent influenza hemagglutinin stem-specific antibody lineages.**. *Structure (London, England : 1993)*. 2025. `PMID:40112805 `_ - Waury Katharina et al. **Comparison of sequence- and structure-based antibody clustering approaches on simulated repertoire sequencing data.**. *PLoS computational biology*. 2025. `PMID:40445971 `_ - Terroba-Navajas Paula et al. **Single-Cell Transcriptomics Identifies a Prominent Role for the MIF-CD74 Axis in Myasthenia Gravis Thymus.**. *Neurology(R) neuroimmunology & neuroinflammation*. 2025. `PMID:40117520 `_ - Calôba Carolina et al. **Systemic 4-1BB stimulation augments extrafollicular memory B cell formation and recall responses during Plasmodium infection.**. *Cell reports*. 2025. `PMID:40215168 `_ - Nicholas Catherine A et al. **Activated polyreactive B cells are clonally expanded in autoantibody positive and patients with recent-onset type 1 diabetes.**. *Cell reports*. 2025. `PMID:40117290 `_ - Perugino Cory A et al. **Two distinct durable human class-switched memory B cell populations are induced by vaccination and infection.**. *Cell reports*. 2025. `PMID:40173042 `_ - Kotagiri Prasanti et al. **Disease-specific B cell clones are shared between patients with Crohn's disease.**. *Nature communications*. 2025. `PMID:40246842 `_ - Ramezani-Rad Parham et al. **The saponin monophosphoryl lipid A nanoparticle adjuvant induces dose-dependent HIV vaccine responses in nonhuman primates.**. *The Journal of clinical investigation*. 2025. `PMID:40036068 `_ - Beaulaurier John et al. **De novo antibody identification in human blood from full-length single B cell transcriptomics and matching haplotype-resolved germline assemblies.**. *Genome research*. 2025. `PMID:40118521 `_ - Madden Patrick J et al. **Diverse priming outcomes under conditions of very rare precursor B cells.**. *Immunity*. 2025. `PMID:40168992 `_ - Nelson Alexander J et al. **Lung-resident memory B cells maintain allergic IgE responses in the respiratory tract.**. *Immunity*. 2025. `PMID:40139187 `_ - França Renato Kaylan Alves de Oliveira et al. **Naive and Memory B Cell BCR Repertoires in Individuals Immunized with an Inactivated SARS-CoV-2 Vaccine.**. *Vaccines*. 2025. `PMID:40333337 `_ - Guillaume Stephane M et al. **Lung B cells in ectopic germinal centers undergo affinity maturation.**. *Proceedings of the National Academy of Sciences of the United States of America*. 2025. `PMID:40168127 `_ - Lai Cong et al. **Myeloid-Driven Immune Suppression Subverts Neutralizing Antibodies and T Cell Immunity in Severe COVID-19.**. *Journal of medical virology*. 2025. `PMID:40183283 `_ - Lee Adrian Ys et al. **Self-reactive B cells are increased in all major stages of peripheral development in Sjögren's disease.**. *Immunology and cell biology*. 2025. `PMID:39957579 `_ - Gailleton Romain et al. **Ectopic germinal centers in the nasal turbinates contribute to B cell immunity to intranasal viral infection and vaccination.**. *Proceedings of the National Academy of Sciences of the United States of America*. 2025. `PMID:40112112 `_ - Okoye G Donald et al. **Single-cell map of innate-like lymphocyte response to Francisella tularensis infection reveals interleukin-17-dependent protection by MAIT cells.**. *iScience*. 2025. `PMID:40160424 `_ - Abdullah Leena et al. **The endogenous antigen-specific CD8+ T cell repertoire is composed of unbiased and biased clonotypes with differential fate commitments.**. *Immunity*. 2025. `PMID:40020673 `_ - Spangler Abby et al. **Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later.**. *Immunity*. 2025. `PMID:40023164 `_ - Rao Vishal et al. **Convergent and clonotype-enriched mutations in the light chain drive affinity maturation of a public antibody.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40161664 `_ - Fujio Keishi et al. **The role of polyreactive memory B cells in systemic lupus erythematosus.**. *International immunology*. 2025. `PMID:39514642 `_ - Wang Meng et al. **Supervised fine-tuning of pre-trained antibody language models improves antigen specificity prediction.**. *PLoS computational biology*. 2025. `PMID:40163503 `_ - van Lieverloo G G A et al. **Unique Nerve Tissue-Restricted T-Cell Clones in Chronic Inflammatory Demyelinating Polyneuropathy.**. *Journal of the peripheral nervous system : JPNS*. 2025. `PMID:39967321 `_ - Zhu Airu et al. **Robust mucosal SARS-CoV-2-specific T cells effectively combat COVID-19 and establish polyfunctional resident memory in patient lungs.**. *Nature immunology*. 2025. `PMID:39875584 `_ - Bréart Béatrice et al. **IL-27 elicits a cytotoxic CD8+ T cell program to enforce tumour control.**. *Nature*. 2025. `PMID:39910298 `_ - Chernyshev Mark et al. **Detection of PCR chimeras in adaptive immune receptor repertoire sequencing using hidden Markov models.**. *bioRxiv : the preprint server for biology*. 2025. `PMID:40060431 `_ - Seo Kayoung et al. **Comprehensive Analysis of TCR and BCR Repertoires: Insights into Methodologies, Challenges, and Applications.**. *Genomics & informatics*. 2025. `PMID:39994831 `_ - Zhou Yun et al. **Biomarker expression level changes within rectal gut-associated lymphoid tissues in spinal cord-injured rats.**. *ImmunoHorizons*. 2025. `PMID:40048710 `_ - Dumm Will et al. **Leveraging DAGs to improve context-sensitive and abundance-aware tree estimation.**. *Philosophical transactions of the Royal Society of London. 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