Local Installation =========================================================================================== Download & Installation ------------------------------------------------------------------------------------------- Installation for both the Python and R packages is performed in the usual manner. To install pRESTO, Change-O and Amulety from PyPI:: > pip3 install presto changeo --user To install Alakazam, SHazaM, TIgGER, SCOPer and dowser from CRAN:: > R > install.packages(c("alakazam", "shazam", "tigger", "scoper", "dowser")) Alternatively, a complete installation of the Immcantation framework and its dependencies is available as a Docker container. Installation of the container is described in :ref:`DockerIntro` and basic usage is described in :ref:`DockerGuide`. Overview of B Cell Repertoire Analysis ------------------------------------------------------------------------------------------- **Yaari and Kleinstein.** Practical guidelines for B-cell receptor repertoire sequencing analysis. *Genome Medicine. 7, 121 (2015).* `doi\:10.1186/s13073-015-0243-2 `__