Immcantation Tutorials

Each tool in the framework has its own documentation site, with detailed usage information and examples. A good starting point to familiarize yourself with the framework is to follow one the tutorials listed here.

Introductory Webinar and Jupyter Notebook

For a detailed use example for each Immcantation tool see the slides and example data from our introductory webinar series. You can find a Jupyter notebook version of the webinar in the repository. If you don’t want to execute the Jupyter notebook yourself, you can explore a website version of it here.

This webinar covers:

• V(D)J gene annotation and novel polymorphism detection

• Inference of B cell clonal relationships

• Diversity analysis

• Mutational load profiling

• Modeling of somatic hypermutation (SHM) targeting

• Quantification of selection pressure

Single-cell Analysis

For information on how to process 10X data to be analyzed with Immcantation, we offer an introductory tutorial for new users, and a Change-O reference page for users more familiar with Immcantation:

• 10X Genomics V(D)J Sequence Analysis Tutorial
• Parsing 10X Data with Change-O