Each tool in the framework has its own documentation site, with detailed usage information and examples. A good starting point to familiarize yourself with the framework is to follow one the tutorials listed here.
Introductory Webinar and Jupyter Notebook¶
For a detailed use example for each Immcantation tool see the slides and example data from our introductory webinar series. You can find a Jupyter notebook version of the webinar in the repository. If you don’t want to execute the Jupyter notebook yourself, you can explore a website version of it here.
This webinar covers:
V(D)J gene annotation and novel polymorphism detection
Inference of B cell clonal relationships
Mutational load profiling
Modeling of somatic hypermutation (SHM) targeting
Quantification of selection pressure