Each tool in the framework has its own documentation site, with detailed usage information and examples. A good starting point to familiarize yourself with the framework is to follow one the tutorials listed here.
Introductory Webinar and Jupyter Notebook¶
For a detailed use example for each Immcantation tool see the slides and example data from our introductory webinar series. You can find a Jupyter notebook version of the webinar in the repository. If you don’t want to execute the Jupyter notebook yourself, you can explore a website version of it here.
This webinar covers:
V(D)J gene annotation and novel polymorphism detection
Inference of B cell clonal relationships
Mutational load profiling
Modeling of somatic hypermutation (SHM) targeting
Quantification of selection pressure
For information on how to process 10x Genomics data to be analyzed with Immcantation, we offer an introductory tutorial for new users, and a Change-O reference page for users more familiar with Immcantation: