Getting Started

Download & Installation

Installation for both the python and R packages is performed in the usual manner.

To install pRESTO and Change-O from PyPI:

> pip3 install presto changeo --user

To install Alakazam, SHazaM, TIgGER and RDI from CRAN:

> R
> install.packages(c("alakazam", "shazam", "tigger", "rdi"))

Immcantation Tutorial

For a detailed use example for each Immcantation tool see the slides and example data from our introductory webinar series.

Overview of B Cell Repertoire Analysis

Yaari and Kleinstein. Practical guidelines for B-cell receptor repertoire sequencing analysis. Genome Medicine. 7, 121 (2015). doi:10.1186/s13073-015-0243-2