Using the Container¶
Invoking a shell inside the container¶
To invoke a shell session inside the container:
# Docker command docker run -it kleinstein/immcantation:2.5.0 bash # Singularity command singularity shell immcantation-2.5.0.img
Executing a specific command¶
To execute a specific command inside the container with
$HOME/project mounted to
# Docker command docker run -v $HOME/project:/data:z kleinstein/immcantation:2.5.0 versions report # Singularity command singularity exec -B $HOME/project:/data immcantation-2.5.0.img versions report
In this case, we are executing the
versions report command which will inspect
the installed software versions and print them to standard output.
There is an analagous
builds report command to display the build date and
changesets used during the image build. This is particularly relevant if you
are using the
kleinstein/immcantation:devel development builds.