Download & Installation¶
Installation for both the python and R packages is performed in the usual manner.
To install pRESTO and Change-O from PyPI:
> pip3 install presto changeo --user
To install Alakazam, SHazaM, TIgGER and SCOPer from CRAN:
> R > install.packages(c("alakazam", "shazam", "tigger", "scoper"))
Alternatively, a complete installation of the Immcantation framework and its dependencies is available as a docker container. Installation of the container is described in Docker Container Installation and Overview and basic usage is described in Using the Container.
This webinar covers:
- V(D)J gene annotation and novel polymorphism detection
- Inference of B cell clonal relationships
- Diversity analysis
- Mutational load profiling
- Modeling of somatic hypermutation (SHM) targeting
- Quantification of selection pressure